MIT Researchers Developed BioAutoMATED: An Automated Machine-Learning System That Can Select And Build An Appropriate Model For A Given Dataset

The task of building machine-learning models can be challenging, particularly for researchers without expertise in machine learning. However, a team of researchers at MIT has developed an innovative solution called BioAutoMATED. This automated machine-learning system streamlines the process of model selection and data preprocessing, significantly reducing the time and effort required. The researchers believe that BioAutoMATED can pave the way for more effective collaborations between biology and machine learning.

BioAutoMATED: A Time-Saving Solution

BioAutoMATED is an automated machine-learning system specifically designed to cater to the needs of biologists. While current automated machine learning (AutoML) systems primarily focus on image and text recognition, the researchers realized that the fundamental language of biology revolves around sequences, such as DNA, RNA, proteins, and glycans. Leveraging this insight, they extended the capabilities of AutoML tools to handle biological sequences.

By combining multiple tools under one umbrella, BioAutoMATED allows for a broader search space in model exploration. The system offers three types of supervised machine-learning models: binary classification, multi-class classification, and regression models. This flexibility enables researchers to handle various data types and determine the data required for effectively training the selected model.

Breaking Barriers and Lowering Costs

The researchers emphasize that BioAutoMATED can significantly reduce the financial barriers associated with conducting experiments at the intersection of biology and machine learning. Typically, biology-centric labs must invest in substantial digital infrastructure and hire AI-ML-trained experts before determining the feasibility of their ideas. However, with BioAutoMATED, researchers can conduct initial experiments and assess the potential benefits of involving a machine-learning expert for further model development.

Promoting Collaboration and Accessibility

To promote wider adoption and collaboration, the researchers have made the open-source code of BioAutoMATED publicly available. They encourage others to utilize and improve upon the code, fostering collaboration within the scientific community. The researchers envision a future where BioAutoMATED becomes a valuable tool accessible to all, merging rigorous biological practices with the rapid advancements of AI-ML techniques.

The development of BioAutoMATED represents a significant breakthrough in automating machine learning for biologists. By simplifying model selection and data preprocessing, this innovative system empowers researchers to explore the potential of machine learning without the need for extensive expertise. With its user-friendly nature and potential to lower barriers to entry, BioAutoMATED has the potential to revolutionize the field of biology and facilitate fruitful collaborations between biologists and machine-learning experts.


Check out the Paper, GitHub link, and MIT Blog. Don’t forget to join our 26k+ ML SubRedditDiscord Channel, and Email Newsletter, where we share the latest AI research news, cool AI projects, and more. If you have any questions regarding the above article or if we missed anything, feel free to email us at [email protected]

🚀 Check Out 100’s AI Tools in AI Tools Club


Niharika is a Technical consulting intern at Marktechpost. She is a third year undergraduate, currently pursuing her B.Tech from Indian Institute of Technology(IIT), Kharagpur. She is a highly enthusiastic individual with a keen interest in Machine learning, Data science and AI and an avid reader of the latest developments in these fields.